Commit Graph

62 Commits

Author SHA1 Message Date
copilot-swe-agent[bot] b7a3b301a3 fix(security): remove clear-text logging of sensitive data and fix Annotated+Depends pattern
- audit_logs.py: Remove _db_dep pattern that fails with latest FastAPI on
  Python 3.11. Use clean DbSession = Annotated[Session, Depends(get_db)]
  without default values.
- billing.py: Remove owner_id from log messages to fix CodeQL clear-text
  logging of sensitive information alerts.
- files.py: Remove owner_id from log messages to fix CodeQL clear-text
  logging of sensitive information alerts.

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-16 12:07:04 +00:00
Christian Krakau-Louis 2a8a4b7471 Merge branch 'main' into code-health/simplify-ui-upload-12009112042086709661 2026-03-16 12:14:11 +01:00
google-labs-jules[bot] fffb7cf357 Fix ruff linting errors resulting from aiofiles addition
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-16 09:44:59 +00:00
github-actions[bot] 80a0ddcbfc style: apply ruff auto-fix
- Auto-formatted code with ruff format
- Applied ruff linting fixes with --fix

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
2026-03-16 09:36:54 +00:00
google-labs-jules[bot] b290cffb98 Performance Optimization: Replace synchronous file upload read with async aiofiles
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-16 09:36:33 +00:00
google-labs-jules[bot] df4b4ae18c 🧹 [Code Health] Simplify complex endpoint ui_upload
Extracted file chunk saving and duplicate detection logic into separate helper functions (`_save_upload_file_chunks` and `_check_for_exact_duplicate`) to improve readability and maintainability of the `ui_upload` endpoint in `app/api/files.py`.

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-16 09:00:35 +00:00
copilot-swe-agent[bot] 1203a4b75f refactor(pipelines): address code review - shared get_current_user_id, aria-live, deduplicate user ID logic
- Extract _get_user_id into shared auth.get_current_user_id() used by both
  pipelines API and the assign-pipeline endpoint in files API
- Fix aria-live attribute: use two separate static containers (polite/assertive)
  instead of dynamic Alpine.js binding for correct screen reader announcements
- Fix migration comment to accurately describe batch-mode FK creation
- Remove redundant tags parameter from reorder endpoint decorator
- Rename _make_file test helper to _make_test_file_record for clarity
- Update docs/UserGuide.md and docs/API.md with full Pipelines reference

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-07 10:39:19 +00:00
copilot-swe-agent[bot] 89e0c2fb50 feat(pipelines): add custom processing pipeline engine
- Add Pipeline and PipelineStep models with user-specific ownership
- Add pipeline_id FK column to FileRecord
- Migration 017_add_pipelines (batch mode for SQLite FK compat)
- Pipeline CRUD API at /api/pipelines with step management endpoints
- Reorder steps PUT endpoint placed before parameterised {step_id} routes
- POST /api/files/{id}/assign-pipeline for per-file pipeline assignment
- Admin-only POST /api/pipelines/admin/system for system-level pipelines
- Management UI at /pipelines (Jinja2 + Alpine.js + Tailwind)
- Pipelines link added to desktop and mobile navigation
- 41 new tests in tests/test_api_pipelines.py (all passing)

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-07 10:32:00 +00:00
copilot-swe-agent[bot] 45949f34c6 fix(api): move quota check before file write in ui-upload endpoint
Subscription quota is now checked before the file is written to disk,
so users who have exceeded their quota do not waste bandwidth or disk
I/O. The post-write cleanup path for quota rejections is no longer
needed and has been removed.

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-06 21:22:46 +00:00
copilot-swe-agent[bot] 7f521eb755 fix(subscriptions): address code review feedback
- Use shared _require_admin from admin_users in subscriptions API endpoint
- Remove unnecessary Alpine.js hidden-div workaround in pricing.html
- Replace fragile string replace for OCR page count with proper Jinja {:,} format
- Improve comment wording in upload quota cleanup code
- Extract _scalar_count() helper in subscription.py to reduce repetition
- Add aria-valuemin='0' to all progressbar elements in subscription/index templates

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-06 16:10:00 +00:00
copilot-swe-agent[bot] 179f6125e8 feat(subscriptions): add SaaS subscription tiers, pricing page, and enforced upload quotas
- Add Free / Starter / Professional / Business tiers with lifetime, daily, and monthly
  file limits (app/utils/subscription.py)
- Add subscription_tier column to UserProfile model + migration 014
- Enforce quotas at upload time (HTTP 402 on violation) in /api/ui-upload
- New REST API: GET /api/subscriptions/tiers, /my, /platform (admin)
- New pages: /pricing (marketing, public) and /subscription (per-user status)
- Enhanced dashboard: SaaS stats (files today/month, OCR count, active users)
  in multi-user mode; original single-user layout preserved
- Admin users page: show Plan badge, allow tier editing via dropdown
- Navigation: add Pricing link + subscription icon in user header
- Tests: 23 unit tests for subscription tier logic
- Docs: docs/SubscriptionTiers.md

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-06 15:53:12 +00:00
copilot-swe-agent[bot] c8bc4afc93 fix: address code review — use modern type hints and Callable annotation
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-05 22:03:30 +00:00
copilot-swe-agent[bot] 5722252dcb feat(multi-user): add unclaimed doc visibility, claim/assign-owner endpoints, default_owner_id
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-05 21:22:51 +00:00
copilot-swe-agent[bot] a8d44b189c refactor(multi-user): address code review - module imports, explicit false(), string length
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-05 11:37:54 +00:00
copilot-swe-agent[bot] 71f437e43a feat(multi-user): add multi-user feature flag, owner_id model field, and user-scoped queries
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-05 11:26:24 +00:00
copilot-swe-agent[bot] ebea83a750 feat(duplicates): add duplicate document detection and management
- Add near_duplicate_threshold config setting (default 0.85)
- New GET /api/duplicates endpoint listing all exact-duplicate groups
- New GET /api/files/{id}/duplicates endpoint returning exact + near-duplicates
- POST /api/ui-upload now returns immediate exact-duplicate warning (respects ENABLE_DEDUPLICATION)
- New /duplicates management UI with Exact Duplicates tab and Near-Duplicate Finder tab
- Add Duplicates link in admin nav menu (desktop + mobile)
- Document new config options in ConfigurationGuide.md and .env.demo
- 20 new tests covering all acceptance criteria

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-02 10:21:57 +00:00
copilot-swe-agent[bot] af34ce88df feat(api): implement proper pagination for file list API
- Change default per_page from 50 to 25
- Rename total_items → total, total_pages → pages in pagination response
- Add next/previous URL fields to pagination response
- Update view and template to use new field names
- Update tests and API docs

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-01 17:31:56 +00:00
copilot-swe-agent[bot] 705b970522 feat: add bulk download, cloud OCR, and basic OCR quality filter
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-01 13:38:42 +00:00
Christian Krakau-Louis 05c35a6775 Merge pull request #437 from christianlouis/copilot/add-file-download-endpoint
fix(api): change download endpoint default version from `original` to `processed`
2026-03-01 13:30:30 +01:00
copilot-swe-agent[bot] d5884f6d2c fix(api): address code review feedback - logging, wildcard escaping, UX
- Add exception logging in saved search error handlers
- Escape SQL LIKE wildcards (%, _) in tags filter to prevent unintended matching
- Improve UI alert message for empty filter save attempt

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-01 11:32:34 +00:00
copilot-swe-agent[bot] e5a4c6c64a feat(api): add advanced filtering and saved searches
- Add date range (date_from/date_to), storage provider, and tags filters to GET /api/files
- Add SavedSearch model and migration (005_add_saved_searches)
- Add CRUD API endpoints for saved searches at /api/saved-searches
- Update files.html template with new filter controls and saved searches UI
- Update files view to pass new filter parameters to template
- Add comprehensive tests for all new functionality (26 tests)

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-01 11:22:07 +00:00
copilot-swe-agent[bot] 7b5494bafb feat(api): default download endpoint to processed file version
- Change default `version` param from 'original' to 'processed' so
  GET /api/files/{id}/download (no param) returns the processed file
- Update docstring to reflect new default
- Add tests: ?version=processed, default→processed, invalid→400
- Fix test_file_download_missing_mime_type to use explicit ?version=original
- Add File Download section to docs/API.md

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-01 11:15:14 +00:00
copilot-swe-agent[bot] bb98afac82 fix(api): use processed_file_path from DB in upload retry path resolution
The upload retry logic now checks file_record.processed_file_path first
(the GPT-suggested filename stored during finalization), before falling
back to legacy hash-based and original-filename-based path patterns.

This fixes the case where the processed file has a different name than
the original (e.g., '2023-10-01_Unknown.pdf' vs 'cable_graphic.pdf')
and the retry couldn't find the file on disk.

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-28 12:56:01 +00:00
Christian Krakau-Louis 0055de3c66 Merge pull request #427 from christianlouis/copilot/fix-processed-file-view-error
fix(api): use stored DB paths for file preview and download
2026-02-27 01:15:44 +01:00
copilot-swe-agent[bot] cded73481e fix(api): use stored file paths for preview and download endpoints
Both get_file_preview and download_file were ignoring the DB-stored
original_file_path and processed_file_path fields, instead relying on
local_filename (a temp path that may be gone) and guessing patterns for
the processed file. This caused "Processed file not found" and
potentially "Original file not found" in the /files/{id} view even when
the files existed at their stored paths.

- version=original: check original_file_path first, fall back to local_filename
- version=processed: check processed_file_path first, fall back to
  hash/filename guessing patterns

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-27 00:01:32 +00:00
copilot-swe-agent[bot] a05690bd5f feat(upload): adaptive 429 backoff, full Gotenberg file types, directory traversal
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-26 23:24:26 +00:00
copilot-swe-agent[bot] 37a3f7aae7 fix(ocr): sync workflow steps with process_with_ocr replacing legacy azure step
- Update _compute_processing_flow to recognize process_with_ocr as the OCR
  stage and remap legacy process_with_azure_document_intelligence log entries
  for backward compatibility
- Normalize legacy OCR step name in _compute_step_summary log fallback
- Add process_with_ocr to REAL_MAIN_STEPS/REAL_STEPS in step_manager,
  file_status, and file_queries (keeping legacy name for old DB entries)
- Update retry logic in api/files.py to retry failed OCR via process_with_ocr
  (handles both step names as aliases)
- Fix process_document.py to log process_with_ocr as skipped (not azure step)
  for the local text extraction path

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-24 22:22:06 +00:00
copilot-swe-agent[bot] 3035802c16 feat(security): add comprehensive input validation and sanitization (#172)
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-22 16:02:00 +00:00
github-actions[bot] 77e777418c style: apply ruff auto-fix
- Auto-formatted code with ruff format
- Applied ruff linting fixes with --fix

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
2026-02-22 15:25:48 +00:00
copilot-swe-agent[bot] ca27a0b687 feat(security): add request size limits to API endpoints
- Add RequestSizeLimitMiddleware that checks Content-Length header
  before request body is read: non-multipart requests capped at
  MAX_REQUEST_BODY_SIZE (default 1 MB), multipart uploads capped at
  MAX_UPLOAD_SIZE (default 1 GB). Returns HTTP 413 on violation.
- Register middleware in app/main.py
- Add max_request_body_size setting to app/config.py
- Fix ui_upload in files.py to check Content-Length early and read
  in 64 KB chunks (bounded memory usage), removing the post-write
  os.path.getsize check
- Document MAX_REQUEST_BODY_SIZE in .env.demo and ConfigurationGuide.md
- Mark SECURITY_AUDIT.md item #4 as resolved
- Add 9 tests in test_request_size_limit.py
- Update test_upload_file_too_large to use patch.object instead of
  the now-unused os.path.getsize mock

Closes #173

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-22 14:41:04 +00:00
copilot-swe-agent[bot] f2eff3e2fb fix: return boolean values from _should_upload functions and fix test expectations
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-16 16:59:17 +00:00
copilot-swe-agent[bot] e6a4995a5c style: run ruff format on 6 files to fix formatting issues
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 22:39:34 +00:00
copilot-swe-agent[bot] c129badc14 feat(api): add enhanced logging and original_file_path fallback to retry-subtask endpoint
- Add comprehensive logging to all pipeline retry branches (process_document, process_with_azure_document_intelligence, extract_metadata_with_gpt, embed_metadata_into_pdf)
- Add original_file_path as 3rd fallback for embed_metadata_into_pdf (checks: local_filename, processed_file_path, original_file_path, workdir/tmp fallback)
- Include all checked paths with existence status in 400 error responses for easier debugging
- Add enhanced logging to upload task retry path showing which processed file paths were checked
- Log successful file path when found
- Add comprehensive test suite covering new logging and fallback behavior

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 22:15:18 +00:00
copilot-swe-agent[bot] bcf5f652fc style: fix linting issues in retry and metadata extraction code
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 21:07:23 +00:00
copilot-swe-agent[bot] 42d35c7c6f fix: handle file in processed directory when retrying embed_metadata_into_pdf
- Update _retry_pipeline_step to check for file in tmp, processed, and fallback locations
- Pass full path to extract_metadata_with_gpt instead of just basename
- Update extract_metadata_with_gpt to handle both basename and full path parameters
- Add test case for retrying when file is in processed directory

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 21:06:20 +00:00
copilot-swe-agent[bot] 43bc58770d refactor: consolidate linting tools into Ruff
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 09:10:52 +00:00
copilot-swe-agent[bot] ff9a3ff49f style: fix code formatting with black, isort, and flake8
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-12 03:21:41 +00:00
copilot-swe-agent[bot] cc98039246 fix(deps): upgrade PyPDF2 to pypdf >= 3.9.0 to fix CVE-2023-36464
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-12 02:52:17 +00:00
copilot-swe-agent[bot] 73a0222e56 feat(storage): implement immutable original/processed file storage and collision handling
- Add original_file_path and processed_file_path columns to FileRecord model
- Create database migration for new fields
- Implement get_unique_filepath_with_counter() with -0001 suffix format
- Update process_document to save immutable copy to /workdir/original
- Add force_cloud_ocr parameter to process_document for forced OCR
- Update embed_metadata to use new collision handling
- Update metadata JSON to include file path references
- Add /files/{file_id}/reprocess-with-cloud-ocr API endpoint
- Update processed_file_path in database during embedding

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 20:10:19 +00:00
copilot-swe-agent[bot] 3a40fe59f5 refactor(api): migrate Depends() to Annotated type hint style in app/api/
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 16:54:55 +00:00
copilot-swe-agent[bot] f7799e409d fix(tasks): prevent filename overwrite in extract_metadata_with_gpt and fix embed retry logic
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 08:59:27 +00:00
copilot-swe-agent[bot] afb4d9bf85 refactor(api): address code review feedback - extract PDF text helper, improve comments
- Extract duplicated PDF text extraction into _extract_text_from_pdf helper
- Clarify empty metadata dict comment for embed_metadata_into_pdf retry
- Make test assertion for file_id passing more explicit

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-10 21:11:46 +00:00
copilot-swe-agent[bot] 11c7d15a90 fix(tasks): skip duplicate check when reprocessing and enable retry from failed pipeline step
- Add file_id parameter to process_document to skip duplicate hash check on reprocess
- Pass file_id from reprocess_single_file and bulk_reprocess_files endpoints
- Extend retry-subtask endpoint to support pipeline steps (process_document,
  process_with_azure_document_intelligence, extract_metadata_with_gpt,
  embed_metadata_into_pdf) in addition to upload tasks
- Add retry button for failed main pipeline steps in file detail UI
- Add comprehensive tests for reprocessing and pipeline step retry

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-10 21:09:53 +00:00
copilot-swe-agent[bot] 8edc11da04 refactor: extract shared file-status query logic into utility function
- Created app/utils/file_queries.py with apply_status_filter function
- Updated app/api/files.py to use shared function
- Updated app/views/files.py to use shared function
- Removed unused 'or_' import from app/api/files.py
- Added comprehensive tests in tests/test_file_queries.py
- All tests pass (10 new tests, 14 existing tests verified)

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-10 20:40:11 +00:00
copilot-swe-agent[bot] 8d347e0a53 feat: Add rate limiting middleware with SlowAPI
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-10 16:17:53 +00:00
copilot-swe-agent[bot] 9ad32e40e6 feat(security): add configurable file upload size limits with optional splitting
- Add MAX_UPLOAD_SIZE config (default 1GB) to prevent resource exhaustion
- Add MAX_SINGLE_FILE_SIZE config for optional PDF file splitting
- Implement automatic PDF splitting when files exceed single file limit
- Update upload endpoint to use configured limits instead of hardcoded 500MB
- Add comprehensive tests for upload limits and file splitting
- Document configuration in ConfigurationGuide.md and SECURITY_AUDIT.md
- Reference SECURITY_AUDIT.md in error messages for user guidance

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-10 10:51:30 +00:00
copilot-swe-agent[bot] 2bcd774d6d fix(security): enhance path traversal protection in file uploads
- Import and use sanitize_filename utility in ui_upload endpoint
- Enhance sanitize_filename to handle Windows-style paths (backslashes)
- Add protection against path traversal patterns (..)
- Replace all path separators with underscores
- Add comprehensive security tests for Windows-style paths and mixed separators
- All existing tests pass with improved security

This addresses the "Uncontrolled data used in path expression" code scanning alert
by ensuring all user-provided filenames are properly sanitized before being used
in any file operations or stored in the database.

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-09 21:00:51 +00:00
copilot-swe-agent[bot] 98cf9e0e0b refactor: consolidate get_db into single module
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-09 15:37:23 +00:00
copilot-swe-agent[bot] d08040ac4a style: fix all flake8 linter errors across app/ directory
- Run Black formatter and isort on all app/ files
- Remove unused imports (F401) across multiple files
- Add # noqa: F401 for intentional re-exports in celery_worker.py,
  tasks/__init__.py, utils.py, frontend.py, views/base.py
- Fix f-strings without placeholders (F541) in azure.py, notification.py,
  check_credentials.py, upload_to_onedrive.py, settings.py
- Fix bare except (E722) in upload_to_sftp.py
- Fix block comment format (E265) in models.py
- Move imports to top of file to fix E402 in celery_app.py, celery_worker.py
- Fix line-too-long (E501) by wrapping strings in multiple files
- Remove unused variable (F841) in upload_to_nextcloud.py

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-08 17:42:33 +00:00
copilot-swe-agent[bot] 334714423e fix(ui): address code review feedback on inline preview
- Remove invalid type attribute from iframe elements
- Add dedicated download endpoint with attachment disposition
- Update download links to use new endpoint instead of preview

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-08 16:16:31 +00:00