Commit Graph

246 Commits

Author SHA1 Message Date
copilot-swe-agent[bot] f2eff3e2fb fix: return boolean values from _should_upload functions and fix test expectations
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-16 16:59:17 +00:00
copilot-swe-agent[bot] d3b3575f8a style: fix import ordering in database.py
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-14 00:32:02 +00:00
copilot-swe-agent[bot] 53a9efa56d feat: add strict mypy type-checking for app/utils/ module
- Add [[tool.mypy.overrides]] section for app/utils/** with disallow_untyped_defs=true
- Add type annotations to all functions in app/utils/ (12 files)
- Fix type annotations in app/config.py and app/database.py (imported by utils)
- All 85 source files now pass mypy type checking

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-14 00:27:52 +00:00
copilot-swe-agent[bot] fc4f5631ee test: increase coverage for imap_tasks.py and fix config_validator.py
- Add comprehensive tests for imap_tasks.py covering:
  - Lock acquire/release mechanisms
  - pull_all_inboxes task with various scenarios
  - pull_inbox for Gmail and non-Gmail with edge cases
  - find_all_mail_xlist functionality
  - Extended fetch_attachments tests for all MIME types
  - Edge cases: invalid JSON, missing Message-ID, already processed, etc.
- Achieve 98.26% coverage for imap_tasks.py (up from 48.78%)

- Fix config_validator.py to include validate_auth_config export
- Update tests to verify all exports including validate_auth_config
- Note: config_validator.py file is shadowed by config_validator/ directory
  in Python's module resolution, so it cannot be directly imported or tested.
  The package's __init__.py (which has 100% coverage) is what's actually used.

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 23:42:49 +00:00
copilot-swe-agent[bot] e6a4995a5c style: run ruff format on 6 files to fix formatting issues
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 22:39:34 +00:00
copilot-swe-agent[bot] c129badc14 feat(api): add enhanced logging and original_file_path fallback to retry-subtask endpoint
- Add comprehensive logging to all pipeline retry branches (process_document, process_with_azure_document_intelligence, extract_metadata_with_gpt, embed_metadata_into_pdf)
- Add original_file_path as 3rd fallback for embed_metadata_into_pdf (checks: local_filename, processed_file_path, original_file_path, workdir/tmp fallback)
- Include all checked paths with existence status in 400 error responses for easier debugging
- Add enhanced logging to upload task retry path showing which processed file paths were checked
- Log successful file path when found
- Add comprehensive test suite covering new logging and fallback behavior

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 22:15:18 +00:00
copilot-swe-agent[bot] bcf5f652fc style: fix linting issues in retry and metadata extraction code
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 21:07:23 +00:00
copilot-swe-agent[bot] 42d35c7c6f fix: handle file in processed directory when retrying embed_metadata_into_pdf
- Update _retry_pipeline_step to check for file in tmp, processed, and fallback locations
- Pass full path to extract_metadata_with_gpt instead of just basename
- Update extract_metadata_with_gpt to handle both basename and full path parameters
- Add test case for retrying when file is in processed directory

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 21:06:20 +00:00
copilot-swe-agent[bot] defcf746ea fix: serialize dict to JSON in rotate_pdf_pages log_task_progress calls
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 20:54:34 +00:00
copilot-swe-agent[bot] 0edc51d17f fix: expose helper functions at module level for test patching
- Move get_all_settings_from_db import to module level in app/views/settings.py
- Move get_provider_status and get_settings_for_display imports to module level in app/views/status.py
- Fix CI workflow: replace deprecated 'file' parameter with 'files' in codecov-action
- Fix CI workflow: update test results upload to use codecov-action@v5 with report_type instead of deprecated test-results-action@v1

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 17:24:22 +00:00
copilot-swe-agent[bot] aa077f2b6c fix: track TLS usage with variable instead of isinstance check
Replace isinstance(ftp, ftplib.FTP_TLS) with a boolean flag to avoid issues when FTP_TLS is mocked in tests. Also fix Google Drive test parameter passing.

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 16:20:32 +00:00
copilot-swe-agent[bot] b42c6f5f64 fix: resolve all Ruff linting errors
- Fix PLW2901: Use different variable name for stripped lines in loop
- Fix E721: Use 'is' instead of '==' for type comparisons
- Add noqa comments for intentional security warnings (S321, S507, S110, S603)

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 16:12:39 +00:00
copilot-swe-agent[bot] 4897cb6655 fix: apply Phase 1-2 correctness and constant extraction from PR #273
- Replace datetime.utcnow() with datetime.now(timezone.utc) in 4 files
- Extract duplicate literals to constants in 5 files
  - models.py: "files.id" → _FILES_ID_FK
  - upload_to_email.py: "logo.png" → _LOGO_FILENAME
  - general.py: "%B %d, %Y" → _DATE_DISPLAY_FORMAT
  - files.py: "File not found" → _FILE_NOT_FOUND
  - upload_to_google_drive.py: Google token URL → _GOOGLE_TOKEN_URL

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 11:25:30 +00:00
copilot-swe-agent[bot] b03ebab747 chore: apply ruff formatting and fix whitespace issues
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 09:12:11 +00:00
copilot-swe-agent[bot] 43bc58770d refactor: consolidate linting tools into Ruff
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-13 09:10:52 +00:00
copilot-swe-agent[bot] dff32e08e1 test: add comprehensive tests for critical untested files and fix deprecated warnings
- Add tests for migrate_logs_to_steps.py, upload_to_paperless.py, dropbox API,
  upload_to_dropbox.py, upload_to_nextcloud.py, upload_to_onedrive.py,
  upload_with_rclone.py, and config_validator.py
- Fix PydanticDeprecatedSince20: @validator → @field_validator in config.py, url_upload.py
- Fix PydanticDeprecatedSince20: class Config → model_config = SettingsConfigDict
- Fix PydanticDeprecatedSince211: filter Pydantic internals in settings_display.py
- Fix MovedIn20Warning: use sqlalchemy.orm.declarative_base instead of ext.declarative

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-12 17:32:17 +00:00
copilot-swe-agent[bot] c67974d350 fix: apply Black formatting to app/auth.py
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-12 14:22:25 +00:00
copilot-swe-agent[bot] 459e9fafc7 fix(test): fix OAuth integration tests and auth redirect status code
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-12 13:17:26 +00:00
copilot-swe-agent[bot] 604facf36f fix(test): fix task __wrapped__ calls, auth imports, mock chains, async markers, and rate limit mock
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-12 13:03:26 +00:00
copilot-swe-agent[bot] ff9a3ff49f style: fix code formatting with black, isort, and flake8
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-12 03:21:41 +00:00
copilot-swe-agent[bot] cc98039246 fix(deps): upgrade PyPDF2 to pypdf >= 3.9.0 to fix CVE-2023-36464
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-12 02:52:17 +00:00
Christian Krakau-Louis 9a2c2d20b1 feat(duplication): implement duplicate file handling and detection across processing steps 2026-02-12 02:38:00 +01:00
Christian Krakau-Louis 70757e5644 feat(step-timeout): add automatic recovery for stalled processing steps
- Implement step timeout detection to prevent files from getting stuck in 'pending' state
- Add monitor_stalled_steps periodic task running every minute (Celery Beat)
- Automatically mark in-progress steps as failed if they exceed timeout (default: 10 minutes)
- Add step_timeout configuration setting (default: 600 seconds)
- Recover stalled steps with error message indicating when timeout was triggered
- Fix duplicate check to exclude self-comparison (file not duplicate of itself)

When processing crashes or hangs:
1. Worker detects stalled steps (in_progress for >10 minutes)
2. Marks them as failed with timeout error message
3. Updates UI to show failure status
4. Allows file to be retried or handled by user

This prevents files from being indefinitely stuck in processing state and provides
visibility into what went wrong.
2026-02-12 02:38:00 +01:00
Christian Krakau-Louis 7bbd095152 fix(deduplication): handle UNIQUE constraint violation for duplicate files
- Remove duplicate record creation to avoid UNIQUE constraint on filehash
- When duplicate detected, return original file_id instead of creating new record
- Avoids sqlite3.IntegrityError: UNIQUE constraint failed
- Simpler approach: duplicates not tracked as separate records, just rejected
- Revert filehash column back to NOT NULL (required for original files)
- Fixes error: (sqlite3.IntegrityError) UNIQUE constraint failed: files.filehash
2026-02-12 02:38:00 +01:00
Christian Krakau-Louis 974dd64660 fix(database): add runtime schema migrations for deduplication columns
- Implement lightweight migration system for is_duplicate and duplicate_of_id columns
- Migrations run automatically on application startup
- Idempotent migrations safe to run multiple times
- Fixes SQLite OperationalError for missing columns
- Resolves issue where database schema didn't match model definitions
2026-02-12 02:38:00 +01:00
Christian Krakau-Louis 4c11cfd6dd feat(deduplication): implement configurable duplicate file detection
- Add enable_deduplication and show_deduplication_step config options
- Rename hash_file step to check_for_duplicates
- Make deduplication step conditional based on configuration
- Add is_duplicate and duplicate_of_id fields to FileRecord model
- Create database migration for new deduplication fields
- Update process_document task to log deduplication results
- Update step visualization to show/hide step based on config
- Update status calculations to include deduplication step conditionally
- Default: deduplication enabled, step displayed
- Can be configured to hide from UI while still processing
2026-02-12 02:38:00 +01:00
Christian Krakau-Louis 83c65f3c40 feat: enhance processing status tracking and UI display for file details 2026-02-12 01:07:22 +01:00
Christian Krakau-Louis 02e1445e01 Enhance file detail page with original and processed file previews, GPT metadata display, and text extraction functionality
- Added endpoints for previewing original and processed PDF files.
- Implemented on-demand text extraction from original and processed PDFs.
- Updated file detail page to show original and processed file paths with existence status.
- Introduced GPT metadata display with a collapsible JSON view.
- Enhanced front-end with PDF.js for in-browser PDF rendering and improved user experience.
- Added integration tests for new features including metadata display and file previews.
2026-02-11 23:32:29 +01:00
Christian Krakau-Louis 7222740204 feat(auth): add configurable admin group name for OAuth user access 2026-02-11 22:53:13 +01:00
Christian Krakau-Louis 50cc0035d9 feat(database): add file path columns to files table during migration
fix(general): update processed files count query to use FileRecord.id

chore: add VSCode settings for pytest configuration
2026-02-11 22:39:21 +01:00
copilot-swe-agent[bot] 952e27b339 test: add tests for storage reorganization features
- Add tests for get_unique_filepath_with_counter collision handling
- Add tests for immutable original storage
- Add tests for metadata augmentation with file paths
- Add tests for force_cloud_ocr parameter
- Verify existing process_document tests still pass

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 20:13:17 +00:00
copilot-swe-agent[bot] 73a0222e56 feat(storage): implement immutable original/processed file storage and collision handling
- Add original_file_path and processed_file_path columns to FileRecord model
- Create database migration for new fields
- Implement get_unique_filepath_with_counter() with -0001 suffix format
- Update process_document to save immutable copy to /workdir/original
- Add force_cloud_ocr parameter to process_document for forced OCR
- Update embed_metadata to use new collision handling
- Update metadata JSON to include file path references
- Add /files/{file_id}/reprocess-with-cloud-ocr API endpoint
- Update processed_file_path in database during embedding

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 20:10:19 +00:00
copilot-swe-agent[bot] 65b6dc6985 feat: Add comprehensive tests and migration utility for status table
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 19:48:17 +00:00
copilot-swe-agent[bot] ad74bc852d feat: Add explicit FileProcessingStep table for status tracking
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 19:45:09 +00:00
copilot-swe-agent[bot] 52b65868a4 refactor: Address code review feedback - remove redundant imports and use _ for unused variables
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 19:42:17 +00:00
copilot-swe-agent[bot] d8d4294ff0 fix: Make _compute_step_summary order-independent to fix dashboard status bug
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 19:38:29 +00:00
copilot-swe-agent[bot] 4fb696e1eb fix: correct file status and metrics to use latest status per step
- Fix _compute_status_from_logs to track latest status per unique step
- Fix _compute_step_summary to count only latest status per step
- Add comprehensive tests for both fixes
- Resolves issue where completed files showed as "Processing"
- Resolves issue where metrics showed incorrect counts

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 18:33:41 +00:00
copilot-swe-agent[bot] 5e82f7c03a refactor: fix static method warnings, hard-coded credentials, and Annotated type hints
- Add @staticmethod to 9 test methods in test_external_integrations.py
  that don't use self (PYL-R0201)
- Extract hard-coded password literals to constants in 6 test files
  to resolve S2068 warnings (fixtures_integration, test_imap_tasks,
  test_upload_tasks, test_upload_webdav_comprehensive,
  test_upload_webdav_integration, test_views_coverage)
- Migrate Form() dependency injection to Annotated type hints in
  dropbox.py, google_drive.py, onedrive.py (Sonar fastapi convention)

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 17:03:54 +00:00
copilot-swe-agent[bot] 3a40fe59f5 refactor(api): migrate Depends() to Annotated type hint style in app/api/
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 16:54:55 +00:00
copilot-swe-agent[bot] 037b4aa94e fix(build): sync VERSION file with semantic-release tags and add build time
- Update generate_build_metadata.sh to sync VERSION from latest git tag
- Change BUILD_DATE format from date-only to ISO 8601 with time (YYYY-MM-DDTHH:MM:SSZ)
- Fix VERSION file from 0.5.0 to 0.9.1 (matching latest git tag v0.9.1)
- Change version fallback from hardcoded '0.5.0-dev' to 'unknown' in config.py
- Update release.yml to commit all build metadata files (not just VERSION)
- Update BuildMetadata.md documentation to reflect automated versioning
- Add tests for build_date with time format and version unknown fallback

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 14:42:37 +00:00
copilot-swe-agent[bot] 9cd7a80cbc fix(api): add Request parameter to process_url endpoint for session access
The @require_login decorator expects a Starlette Request as the first
parameter to access request.session, but process_url only had a
URLUploadRequest Pydantic model parameter. This caused an
AttributeError: 'URLUploadRequest' object has no attribute 'session'
when POST /api/process-url was called.

Fix: Add `request: Request` as the first parameter and rename the
Pydantic model parameter from `request` to `url_request`.

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 14:25:57 +00:00
copilot-swe-agent[bot] 47a1de953d refactor: address code review comments
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 13:39:35 +00:00
copilot-swe-agent[bot] 245e298991 feat: add URL-based file upload with SSRF protection
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 13:36:23 +00:00
copilot-swe-agent[bot] 2b2394f858 fix: pass task_id to check_page_rotation helper for consistent log prefixing
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 10:15:08 +00:00
copilot-swe-agent[bot] 6f286e37b3 feat(tasks): add detailed logging to upload_with_rclone task functions
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 10:06:51 +00:00
copilot-swe-agent[bot] 14eacc7c23 feat(tasks): add detailed logging to rotate_pdf_pages task
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 10:02:25 +00:00
copilot-swe-agent[bot] 4153c5bbcb feat(tasks): add detailed logging to refine_text_with_gpt task
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 09:57:46 +00:00
copilot-swe-agent[bot] acec9954a0 feat(tasks): add detailed logging to Azure Document Intelligence task
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 09:54:53 +00:00
copilot-swe-agent[bot] 3e78ee4c27 fix(logging): address code review feedback for TaskLogCollector robustness
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 09:15:44 +00:00
copilot-swe-agent[bot] dfa4b16776 feat(tasks): auto-capture worker log output for all tasks via TaskLogCollector
Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-02-11 09:13:09 +00:00