Files
gh-christianlouis-docuelevate/tests/test_database.py
T
copilot-swe-agent[bot] 87d1b9d935 refactor(database): enforce Alembic-only database migrations, deprecate manual schema migrations
- Create alembic.ini and migrations/env.py for full Alembic CLI + programmatic support
- Add Alembic migration 006: detail column on processing_logs
- Add Alembic migration 007: ocr_quality_score column + drop unique filehash index
- Add Alembic migration 008: performance indexes
- Replace _run_schema_migrations() call in init_db() with _run_alembic_upgrade()
- Deprecate _run_schema_migrations() with DeprecationWarning
- Update tests for new Alembic-based approach and deprecation
- Update DatabaseConfiguration.md documentation

Co-authored-by: christianlouis <361235+christianlouis@users.noreply.github.com>
2026-03-01 16:47:41 +00:00

666 lines
24 KiB
Python

"""Tests for app/database.py module."""
import warnings
from unittest.mock import MagicMock, patch
import pytest
from app.database import get_db, init_db
@pytest.mark.unit
class TestInitDb:
"""Tests for init_db function."""
def test_init_db_creates_tables(self):
"""Test that init_db creates tables without error."""
# In test environment, DATABASE_URL is sqlite:///:memory:
init_db()
@patch("app.database.make_url")
@patch("app.database.Base")
def test_init_db_with_sqlite_file(self, mock_base, mock_make_url, tmp_path):
"""Test init_db with a file-based SQLite database."""
db_path = str(tmp_path / "test_db" / "test.db")
mock_url = MagicMock()
mock_url.get_backend_name.return_value = "sqlite"
mock_url.database = db_path
mock_make_url.return_value = mock_url
init_db()
@patch("app.database.make_url")
@patch("app.database.Base")
def test_init_db_with_memory_db(self, mock_base, mock_make_url):
"""Test init_db with in-memory database."""
mock_url = MagicMock()
mock_url.get_backend_name.return_value = "sqlite"
mock_url.database = ":memory:"
mock_make_url.return_value = mock_url
init_db()
@patch("app.database.make_url")
@patch("app.database.Base")
def test_init_db_with_non_sqlite(self, mock_base, mock_make_url):
"""Test init_db with non-SQLite database."""
mock_url = MagicMock()
mock_url.get_backend_name.return_value = "postgresql"
mock_make_url.return_value = mock_url
init_db()
@pytest.mark.unit
class TestGetDb:
"""Tests for get_db function."""
def test_get_db_yields_session(self):
"""Test that get_db yields a session and closes it."""
gen = get_db()
session = next(gen)
assert session is not None
# Clean up
try:
next(gen)
except StopIteration:
pass
def test_get_db_closes_session_on_exit(self):
"""Test that the session is closed when exiting the generator."""
gen = get_db()
session = next(gen)
# Force the generator to close
gen.close()
@pytest.mark.unit
class TestSchemaMigrations:
"""Tests for schema migration logic."""
def test_processing_log_detail_column_exists(self, db_session):
"""Test that ProcessingLog has the detail column."""
from app.models import ProcessingLog
log = ProcessingLog(
task_id="test-task",
step_name="test_step",
status="success",
message="Short message",
detail="Verbose worker log output\nWith multiple lines",
)
db_session.add(log)
db_session.commit()
db_session.refresh(log)
assert log.detail == "Verbose worker log output\nWith multiple lines"
def test_processing_log_detail_nullable(self, db_session):
"""Test that detail column is nullable (backward compatible)."""
from app.models import ProcessingLog
log = ProcessingLog(
task_id="test-task-2",
step_name="test_step",
status="success",
message="Short message",
)
db_session.add(log)
db_session.commit()
db_session.refresh(log)
assert log.detail is None
def test_deprecated_run_schema_migrations_warns(self, tmp_path):
"""Test that _run_schema_migrations emits a DeprecationWarning."""
from sqlalchemy import create_engine
from app.database import _run_schema_migrations
db_path = str(tmp_path / "deprecation_test.db")
engine = create_engine(f"sqlite:///{db_path}")
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter("always")
_run_schema_migrations(engine)
assert len(w) == 1
assert issubclass(w[0].category, DeprecationWarning)
assert "deprecated" in str(w[0].message).lower()
assert "Alembic" in str(w[0].message)
engine.dispose()
def test_deprecated_migration_still_adds_detail_column(self, tmp_path):
"""Test that deprecated _run_schema_migrations still works for legacy callers."""
from sqlalchemy import create_engine, text
from app.database import _run_schema_migrations
# Create a database with the old schema (no detail column)
db_path = str(tmp_path / "migration_test.db")
engine = create_engine(f"sqlite:///{db_path}")
with engine.begin() as conn:
conn.execute(
text(
"CREATE TABLE processing_logs ("
"id INTEGER PRIMARY KEY, "
"file_id INTEGER, "
"task_id VARCHAR, "
"step_name VARCHAR, "
"status VARCHAR, "
"message VARCHAR, "
"timestamp DATETIME)"
)
)
# Run deprecated migrations (suppress warning for test clarity)
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
_run_schema_migrations(engine)
# Verify detail column was added
from sqlalchemy import inspect
inspector = inspect(engine)
columns = [col["name"] for col in inspector.get_columns("processing_logs")]
assert "detail" in columns
engine.dispose()
def test_deprecated_migration_adds_file_path_columns(self, tmp_path):
"""Test that deprecated _run_schema_migrations adds file path columns to files table."""
from sqlalchemy import create_engine, text
from app.database import _run_schema_migrations
# Create a database with the old schema (no file path columns)
db_path = str(tmp_path / "migration_files_test.db")
engine = create_engine(f"sqlite:///{db_path}")
with engine.begin() as conn:
conn.execute(
text(
"CREATE TABLE files ("
"id INTEGER PRIMARY KEY, "
"filename VARCHAR, "
"filehash VARCHAR, "
"upload_date DATETIME)"
)
)
# Run deprecated migrations
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
_run_schema_migrations(engine)
# Verify columns were added with correct types
from sqlalchemy import inspect
inspector = inspect(engine)
columns = {col["name"]: col for col in inspector.get_columns("files")}
assert "original_file_path" in columns
assert columns["original_file_path"]["type"].__class__.__name__ in ("VARCHAR", "String", "TEXT")
assert "processed_file_path" in columns
assert columns["processed_file_path"]["type"].__class__.__name__ in ("VARCHAR", "String", "TEXT")
assert "is_duplicate" in columns
assert columns["is_duplicate"]["type"].__class__.__name__ in ("BOOLEAN", "Integer")
assert "duplicate_of_id" in columns
assert columns["duplicate_of_id"]["type"].__class__.__name__ in ("INTEGER", "Integer")
assert "ocr_text" in columns
assert "ai_metadata" in columns
assert "document_title" in columns
engine.dispose()
def test_deprecated_migration_handles_missing_tables_gracefully(self, tmp_path):
"""Test that deprecated migrations don't fail when tables don't exist."""
from sqlalchemy import create_engine
from app.database import _run_schema_migrations
# Create an empty database
db_path = str(tmp_path / "empty_db_test.db")
engine = create_engine(f"sqlite:///{db_path}")
# Run migrations - should not raise any errors
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
_run_schema_migrations(engine)
engine.dispose()
def test_deprecated_migration_is_idempotent(self, tmp_path):
"""Test that running deprecated migrations multiple times is safe."""
from sqlalchemy import create_engine, text
from app.database import _run_schema_migrations
# Create a database with old schema
db_path = str(tmp_path / "idempotent_test.db")
engine = create_engine(f"sqlite:///{db_path}")
with engine.begin() as conn:
conn.execute(
text(
"CREATE TABLE processing_logs ("
"id INTEGER PRIMARY KEY, "
"file_id INTEGER, "
"task_id VARCHAR, "
"step_name VARCHAR, "
"status VARCHAR, "
"message VARCHAR, "
"timestamp DATETIME)"
)
)
conn.execute(
text(
"CREATE TABLE files ("
"id INTEGER PRIMARY KEY, "
"filename VARCHAR, "
"filehash VARCHAR, "
"upload_date DATETIME)"
)
)
# Run deprecated migrations multiple times
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
_run_schema_migrations(engine)
_run_schema_migrations(engine)
_run_schema_migrations(engine)
# Verify all columns exist and no errors occurred
from sqlalchemy import inspect
inspector = inspect(engine)
processing_log_columns = [col["name"] for col in inspector.get_columns("processing_logs")]
assert "detail" in processing_log_columns
files_columns = [col["name"] for col in inspector.get_columns("files")]
assert "original_file_path" in files_columns
assert "processed_file_path" in files_columns
assert "is_duplicate" in files_columns
assert "duplicate_of_id" in files_columns
assert "ocr_text" in files_columns
assert "ai_metadata" in files_columns
assert "document_title" in files_columns
engine.dispose()
@pytest.mark.unit
class TestInitDbErrors:
"""Tests for error handling in init_db function."""
@patch("app.database.Base")
@patch("app.database.make_url")
def test_init_db_handles_sqlalchemy_error(self, mock_make_url, mock_base):
"""Test that init_db properly handles SQLAlchemy errors."""
from sqlalchemy import exc
# Mock to raise SQLAlchemy error
mock_url = MagicMock()
mock_url.get_backend_name.return_value = "sqlite"
mock_url.database = ":memory:"
mock_make_url.return_value = mock_url
mock_base.metadata.create_all.side_effect = exc.SQLAlchemyError("Database error")
with pytest.raises(exc.SQLAlchemyError):
init_db()
@pytest.mark.unit
class TestMultiVersionMigrations:
"""Test deprecated migration scenarios from various database versions.
These tests verify the deprecated _run_schema_migrations function still
works for legacy callers. New schema changes should use Alembic exclusively.
"""
def test_migration_from_v1_to_v2_processing_logs(self, tmp_path):
"""Test migration from v1 (no detail column) to v2 (with detail)."""
from sqlalchemy import create_engine, inspect, text
from app.database import _run_schema_migrations
# Create v1 database (without detail column)
db_path = str(tmp_path / "v1_to_v2.db")
engine = create_engine(f"sqlite:///{db_path}")
with engine.begin() as conn:
conn.execute(
text(
"CREATE TABLE processing_logs ("
"id INTEGER PRIMARY KEY, "
"file_id INTEGER, "
"task_id VARCHAR, "
"step_name VARCHAR, "
"status VARCHAR, "
"message VARCHAR, "
"timestamp DATETIME)"
)
)
# Insert test data
conn.execute(
text(
"INSERT INTO processing_logs (task_id, step_name, status, message) "
"VALUES ('test-1', 'test_step', 'success', 'Test message')"
)
)
# Run migration to v2
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
_run_schema_migrations(engine)
# Verify detail column exists and old data is preserved
inspector = inspect(engine)
columns = [col["name"] for col in inspector.get_columns("processing_logs")]
assert "detail" in columns
# Verify old data still accessible
with engine.connect() as conn:
result = conn.execute(text("SELECT task_id, message, detail FROM processing_logs WHERE task_id = 'test-1'"))
row = result.fetchone()
assert row[0] == "test-1"
assert row[1] == "Test message"
assert row[2] is None # detail should be NULL for old records
engine.dispose()
def test_migration_from_v1_to_v3_files_table(self, tmp_path):
"""Test migration from v1 (basic) to v3 (with dedup columns)."""
from sqlalchemy import create_engine, inspect, text
from app.database import _run_schema_migrations
# Create v1 database (minimal files table)
db_path = str(tmp_path / "v1_to_v3.db")
engine = create_engine(f"sqlite:///{db_path}")
with engine.begin() as conn:
conn.execute(
text(
"CREATE TABLE files ("
"id INTEGER PRIMARY KEY, "
"filename VARCHAR, "
"filehash VARCHAR, "
"upload_date DATETIME)"
)
)
# Insert test data
conn.execute(text("INSERT INTO files (filename, filehash) VALUES ('test.pdf', 'abc123')"))
# Run migration to v3 (adds path columns and dedup columns)
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
_run_schema_migrations(engine)
# Verify all new columns exist
inspector = inspect(engine)
columns = {col["name"] for col in inspector.get_columns("files")}
assert "original_file_path" in columns
assert "processed_file_path" in columns
assert "is_duplicate" in columns
assert "duplicate_of_id" in columns
# Verify old data preserved with default values
with engine.connect() as conn:
result = conn.execute(text("SELECT filename, is_duplicate FROM files WHERE filename = 'test.pdf'"))
row = result.fetchone()
assert row[0] == "test.pdf"
# is_duplicate should be False (0) by default
assert row[1] in (0, False)
engine.dispose()
def test_migration_with_unique_index_already_dropped(self, tmp_path):
"""Test that migration handles case where unique index was already dropped."""
from sqlalchemy import create_engine, text
from app.database import _run_schema_migrations
# Create database without unique index
db_path = str(tmp_path / "no_index.db")
engine = create_engine(f"sqlite:///{db_path}")
with engine.begin() as conn:
conn.execute(
text(
"CREATE TABLE files ("
"id INTEGER PRIMARY KEY, "
"filename VARCHAR, "
"filehash VARCHAR, "
"original_file_path VARCHAR, "
"processed_file_path VARCHAR, "
"is_duplicate BOOLEAN DEFAULT FALSE NOT NULL, "
"duplicate_of_id INTEGER)"
)
)
# Run migration - should not error even though there's no index to drop
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
_run_schema_migrations(engine)
# Should complete without error
engine.dispose()
def test_migration_partial_state(self, tmp_path):
"""Test migration from partial state (some columns added, some missing)."""
from sqlalchemy import create_engine, inspect, text
from app.database import _run_schema_migrations
# Create database with only some of the new columns
db_path = str(tmp_path / "partial.db")
engine = create_engine(f"sqlite:///{db_path}")
with engine.begin() as conn:
# Files table with only original_file_path, missing processed_file_path and dedup columns
conn.execute(
text(
"CREATE TABLE files ("
"id INTEGER PRIMARY KEY, "
"filename VARCHAR, "
"filehash VARCHAR, "
"original_file_path VARCHAR)"
)
)
# Processing logs with detail column already present
conn.execute(
text(
"CREATE TABLE processing_logs ("
"id INTEGER PRIMARY KEY, "
"task_id VARCHAR, "
"step_name VARCHAR, "
"status VARCHAR, "
"message VARCHAR, "
"detail TEXT, "
"timestamp DATETIME)"
)
)
# Run migration - should add missing columns only
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
_run_schema_migrations(engine)
# Verify all columns exist now
inspector = inspect(engine)
files_columns = {col["name"] for col in inspector.get_columns("files")}
assert "original_file_path" in files_columns
assert "processed_file_path" in files_columns
assert "is_duplicate" in files_columns
assert "duplicate_of_id" in files_columns
logs_columns = {col["name"] for col in inspector.get_columns("processing_logs")}
assert "detail" in logs_columns
engine.dispose()
def test_migration_exception_handling(self, tmp_path):
"""Test that migration handles exceptions gracefully for index operations."""
from sqlalchemy import create_engine, text
from app.database import _run_schema_migrations
# Create database with all columns but trigger exception path
db_path = str(tmp_path / "exception_test.db")
engine = create_engine(f"sqlite:///{db_path}")
with engine.begin() as conn:
conn.execute(
text(
"CREATE TABLE files ("
"id INTEGER PRIMARY KEY, "
"filename VARCHAR, "
"filehash VARCHAR, "
"original_file_path VARCHAR, "
"processed_file_path VARCHAR, "
"is_duplicate BOOLEAN DEFAULT FALSE NOT NULL, "
"duplicate_of_id INTEGER)"
)
)
# Run migration - should handle the exception path for index operations
# (when get_indexes might have issues)
try:
with warnings.catch_warnings():
warnings.simplefilter("ignore", DeprecationWarning)
_run_schema_migrations(engine)
# Should complete without raising
except Exception as e:
pytest.fail(f"Migration should handle exceptions gracefully: {e}")
engine.dispose()
@pytest.mark.unit
class TestAlembicUpgrade:
"""Tests for Alembic-based migration management."""
def test_alembic_upgrade_stamps_fresh_database(self, tmp_path):
"""Test that _run_alembic_upgrade stamps a fresh database to head."""
from sqlalchemy import create_engine, inspect, text
from app.database import Base, _run_alembic_upgrade
db_path = str(tmp_path / "fresh_alembic.db")
engine = create_engine(f"sqlite:///{db_path}")
# Create all tables (simulates Base.metadata.create_all)
Base.metadata.create_all(bind=engine)
# Run Alembic upgrade — should stamp to head (not run migrations)
_run_alembic_upgrade(engine)
# Verify alembic_version table exists and has a revision
inspector = inspect(engine)
assert "alembic_version" in inspector.get_table_names()
with engine.connect() as conn:
result = conn.execute(text("SELECT version_num FROM alembic_version"))
row = result.fetchone()
assert row is not None
# Should be stamped to the latest revision
assert row[0] == "008_add_performance_indexes"
engine.dispose()
def test_alembic_upgrade_applies_pending_migrations(self, tmp_path):
"""Test that _run_alembic_upgrade applies pending migrations to a tracked DB."""
from sqlalchemy import create_engine, text
from app.database import Base, _run_alembic_upgrade
db_path = str(tmp_path / "tracked_alembic.db")
engine = create_engine(f"sqlite:///{db_path}")
# Create all tables
Base.metadata.create_all(bind=engine)
# Manually create alembic_version table and set to an earlier revision
with engine.begin() as conn:
conn.execute(text("CREATE TABLE alembic_version (version_num VARCHAR(32) NOT NULL)"))
conn.execute(text("INSERT INTO alembic_version (version_num) VALUES ('008_add_performance_indexes')"))
# Run Alembic upgrade — should run pending migrations (none in this case)
_run_alembic_upgrade(engine)
# Verify alembic_version table still has the head revision
with engine.connect() as conn:
result = conn.execute(text("SELECT version_num FROM alembic_version"))
row = result.fetchone()
assert row is not None
engine.dispose()
def test_alembic_upgrade_idempotent(self, tmp_path):
"""Test that calling _run_alembic_upgrade multiple times is safe."""
from sqlalchemy import create_engine, text
from app.database import Base, _run_alembic_upgrade
db_path = str(tmp_path / "idempotent_alembic.db")
engine = create_engine(f"sqlite:///{db_path}")
Base.metadata.create_all(bind=engine)
# Run multiple times — should not raise
_run_alembic_upgrade(engine)
_run_alembic_upgrade(engine)
_run_alembic_upgrade(engine)
# Verify revision is still head
with engine.connect() as conn:
result = conn.execute(text("SELECT version_num FROM alembic_version"))
row = result.fetchone()
assert row is not None
assert row[0] == "008_add_performance_indexes"
engine.dispose()
def test_all_migration_revisions_exist(self):
"""Test that all expected Alembic migration revisions are present."""
from pathlib import Path
migrations_dir = Path(__file__).resolve().parent.parent / "migrations" / "versions"
migration_files = sorted(migrations_dir.glob("*.py"))
expected_prefixes = [
"001_file_processing_steps",
"002_add_file_paths",
"003_add_deduplication_support",
"004_add_search_fields",
"005_add_saved_searches",
"006_add_detail_column",
"007_add_ocr_quality_drop_filehash_unique",
"008_add_performance_indexes",
]
migration_names = [f.stem for f in migration_files]
for prefix in expected_prefixes:
assert prefix in migration_names, f"Missing Alembic migration: {prefix}"
def test_migration_chain_is_connected(self):
"""Test that the Alembic migration chain is properly connected."""
from pathlib import Path
from alembic.config import Config
from alembic.script import ScriptDirectory
migrations_dir = str(Path(__file__).resolve().parent.parent / "migrations")
alembic_cfg = Config()
alembic_cfg.set_main_option("script_location", migrations_dir)
script = ScriptDirectory.from_config(alembic_cfg)
# Walk the chain from base to head — should not raise
revisions = list(script.walk_revisions())
assert len(revisions) == 8 # 001 through 008
# Verify head is the performance indexes migration
heads = script.get_heads()
assert "008_add_performance_indexes" in heads